List of Publications
Dr. Anja Poehlein
276. Adenaya A, Spriahailo D, Berger M, Noster J, Milke F, Schulz C, Reinthaler T, Poehlein A, Wurl O, Ribas-Ribas M, Hamprecht A, Brinkhoff T (2024) Occurrence of antibiotic-resistant bacteria in the sea surface microlayer of coastal waters in the southern North Sea. Ecotoxicol Environ Saf 287:117259. (doi:10.1016/j.ecoenv.2024.117259)
275. Baum C, Zeldes B, Poehlein A, Daniel R, Müller V, Basen M (2024) The energy-converting hydrogenase Ech2 is important for the growth of the thermophilic acetogen Thermoanaerobacter kivui on ferredoxin-dependent substrates. Microbiol Spectr 22:e0338023. (doi:10.1128/spectrum.03380-23)
274. Böer T, Bengelsdorf FR, Daniel R, Poehlein A (2024) Complete genome sequences of Blautia hydrogenotrophica DSM 10507T isolated from human feces and Blautia coccoides DSM 935T isolated from mouse feces. Microbiol Resour Announc 13(4):e00016-24. (doi:10.1128/mra.00016-24)
273. Böer T, Engelhardt L, Lüschen A, Eysell L, Yoshida H, Schneider D, Angenent LT, Basen M, Daniel R, Poehlein A (2024) Isolation and characterization of novel acetogenic Moorella strains for employment as potential thermophilic biocatalysts. FEMS Microbiol Ecol 100(9):fiae109. (doi:10.1093/femsec/fiae109)
272. Böer T, Lüschen A, Daniel R, Poehlein A (2024) Complete genome sequence of Sporomusa sphaeroides DSM 2875T isolated from mud of the Leine river and Sporomusa ovata DSM 2662T isolated from sugar beet leaf silage. Microbiol Resour Announc 13(9):e0037224. (doi:10.1128/mra.00372-24)
271. Böer T, Schüler MA, Lüschen A, Eysell L, Dröge J, Heinemann M, Engelhardt L, Basen M, Daniel R, Poehlein A (2024) Isolation and characterization of novel acetogenic strains of the genera Terrisporobacter and Acetoanaerobium. Front Microbiol 15:1426882. (doi:10.3389/fmicb.2024.1426882)
270. Brønnum Bjerg CS, Poehlein A, Bömeke M, Himmelbach A, Schramm A, Brüggemann H (2024) Increased biofilm formation in dual-strain compared to single-strain communities of Cutibacterium acnes. Sci Rep 14:14547. (doi:10.1038/s41598-024-65348-y)
269. Flaiz M, Poehlein A, Wilhelm W, Mook A, Daniel R, Dürre P, Bengelsdorf FR (2024) Refining and illuminating acetogenic Eubacterium strains for reclassification and metabolic engineering. Microb Cell Fact 23:24. (doi:10.1186/s12934-024-02301-8)
268. Funkner K, Poehlein A, Jehmlich N, Egelkamp R, Daniel R, von Bergen M, Rother M0 (2024) Proteomic and transcriptomic analysis of selenium utilization in Methanococcus maripaludis. mSystems e01338-23. (doi:10.1128/mSystems.01338-23)
267. Goehlich H, Roth O, Sieber M, Chibani CM, Poehlein A, Rajkov J, Liesegang H, Wendling CC (2024) Suboptimal environmental conditions prolong phage epidemics in bacterial populations. Mol Ecol 33:e17050. (doi:10.1111/mec.17050)
266. Hahnke S, Berger M, Schlingloff A, Athale I, Wolf J, Neumann-Schaal M, Adenaya A, Poehlein A, Daniel R, Petersen J, Brinkhoff T (2024) Roseobacter fucihabitans sp. nov., isolated from the brown alga Fucus spiralis. Int J Syst Evol Microbiol 74(6):006403. (doi:10.1099/ijsem.0.006403)
265. Holert J, Borker A, Nübel LL, Daniel R, Poehlein A, Philipp B (2024) Bacteria use a catabolic patchwork pathway of apparently recent origin for degradation of the synthetic buffer compound TRIS. ISME J 18(1):. (doi:10.1093/ismejo/wrad023)
264. Moon J, Poehlein A, Daniel R, Müller V (2024) Redirecting electron flow in Acetobacterium woodii enables growth on CO and improves growth on formate. Nat Commun 15:5424. (doi:10.1038/s41467-024-49680-5)
263. Ravagnan G, Lesemann J, Müller M-F, Poehlein A, Daniel R, Noack S, Kabisch J, Schmid J (2024) Genome reduction in Paenibacillus polymyxa DSM 365 for chassis development. Front Bioeng Biotechnol 12:1378873. (doi:10.3389/fbioe.2024.1378873)
262. Regalado L, Appelhans MS, Poehlein A, Himmelbach A, Schmidt AR (2024) Plastome phylogenomics and new fossil evidence from Dominican amber shed light on the evolutionary history of the Neotropical fern genus Pecluma. AJ Botany e16410. (doi:10.1002/ajb2.16410)
261. Schüler MA, Poehlein A, Daniel R (2024) Detektions-PCR und Amplikon- Sequenzierung: ein Power-Paar. BIOspektrum 30:533-535. (doi:10.1007/s12268-024-2282-y)
260. Schüler MA, Schneider D, Poehlein A, Daniel R (2024) Culture-independent detection of low-abundant Clostridioides difficile in environmental DNA via PCR. Appl Environ Microbiol 9:e01278-23. (doi:10.1128/aem.01278-23)
259. Schüler MA, Daniel R, Poehlein A (2024) Novel insights into phage biology of the pathogen Clostridioides difficile based on the active virome. Front Microbiol 15:1374708. (doi:10.3389/fmicb.2024.1374708)
258. Schüler MA, Riedel T, Overmann J, Daniel R, Poehlein A (2024) Comparative genome analyses of clinical and non-clinical Clostridioides difficile strains. Front Microbiol 15:1404491. (doi:10.3389/fmicb.2024.1404491)
257. Trischler R, Rustler SM, Poehlein A, Daniel R, Breitenbach M, Helfrich EJN, Müller V (2024) 3-Hydroxypropionate production from myo-inositol by the gut acetogen Blautia schinkii. Environ Microbiol 26(9):e16692. (doi:10.1111/1462-2920.16692)
256. Wicke D, Neumann P, Gößringer M, Chernev A, Davydov S, Poehlein A, Daniel R, Urlaub H, Hartmann RK, Ficner R, Stülke J (2024) The previously uncharacterized RnpM (YlxR) protein modulates the activity of ribonuclease P in Bacillus subtilis in vitro. Nucleic Acids Res 52:1404-1419. (doi:10.1093/nar/gkad1171)
255. Alberti L, König P, Zeidler S, Poehlein A, Daniel R, Averhoff B, Müller V (2023) Identification and characterization of a novel pathway for aldopentose degradation in Acinetobacter baumannii. Appl Environ Microbiol 25(11):2416-2430. (doi:10.1111/1462-2920.16471)
254. Böer T, Bengelsdorf FR, Bömeke M, Daniel R, Poehlein A (2023) Genome-based metabolic and phylogenomic analysis of three Terrisporobacter species. PLoS One 18(10):e0290128. (doi:10.1371/journal.pone.0290128)
253. Friedrich I, Neubauer H, Kuritsyn A, Bodenberger B, Tskhay F, Hartmann S, Poehlein A, Bömeke M, Hoppert M, Schneider D, Hertel R, Daniel R (2023) Brevundimonas and Serratia as host systems for assessing associated environmental viromes and phage diversity by complementary approaches. Front Microbiol 14:1095850. (doi:10.3389/fmicb.2023.1095850)
252. Guzman J, Poehlein A, Daniel R, Kämpfer P, Vilcinskas A (2023) Vagococcus luciliae sp. nov., isolated from the common green bottle fly Lucilia sericata. Int J Syst Evol Microbiol 73(3):005787. (doi:10.1099/ijsem.0.005787)
251. Guzman J, Raval D, Hauck D, Titz A, Poehlein A, Degenkolb T, Daniel R, Vilcinskas A (2023) The resuscitation-promoting factor (Rpf) from Micrococcus luteus and its putative reaction product 1,6-anhydro-MurNAc increase culturability of environmental bacteria. Access Microbiol 5:000647.v4. (doi:10.1099/acmi.0.000647.v4)
250. Guzman J, Won M, Poehlein A, Sombolestani AS, Mayorga-Ch D, Laureys D, Clippeleer J, Kämpfer P, Daniel R, Vilcinskas A, Vandamme P, Kwon SW (2023) Aristophania vespae gen. nov., sp. nov., isolated from wasps, is related to Bombella and Oecophyllibacter, isolated from bees and ants. Int J Syst Evol Microbiol 73(2):005699. (doi:10.1099/ijsem.0.005699)
249. Heffner T, Brami SA, Mendes LW, Kaupper T, Hannula ES, Poehlein A, Horn MA, Ho A (2023) Interkingdom interaction: the soil isopod Porcellio scaber stimulates the methane-driven bacterial and fungal interaction. ISME COMMUN 3(1):62. (doi:10.1038/s43705-023-00271-3)
248. Hollensteiner J, Schneider D, Poehlein A, Brinkhoff T, Daniel R (2023) Pan-genome analysis of six Paracoccus type strain genomes reveal lifestyle traits. PLoS One 18(12):e0287947. (doi:10.1371/journal.pone.0287947)
247. Hollensteiner J, Schneider D, Poehlein A, Himmelbach A, Daniel R (2023) Metagenome-assembled genomes from particle-associated microbial communities in the mesopelagic zone of the Pacific Ocean. Microbiol Resour Announc 12(12):e0061423. (doi:10.1128/MRA.00614-23)
246. Jensen MG, Svraka L, Baez E, Lund M, Poehlein A, Brüggemann H (2023) Species- and strain-level diversity of Corynebacteria isolated from human facial skin. BMC Microbiol 23:366. (doi: 10.1186/s12866-023-03129-9)
245. König P, Wilhelm A, Schaudinn C, Poehlein A, Daniel R, Widera M, Averhoff B, Müller V (2023) The VBNC state: a fundamental survival strategy of Acinetobacter baumannii. mBio 28:e0213923. (doi:10.1128/mbio.02139-23)
244. Lehmann M, Prohaska C, Zeldes B, Poehlein A, Daniel R, Basen M (2023) Adaptive laboratory evolution of a thermophile toward a reduced growth temperature optimum. Front Microbiol 14:1265216. (doi:10.3389/fmicb.2023.1265216)
243. Liu Y, Brinkhoff T, Berger M, Poehlein A, Voget S, Paoli L, Sunagawa S, Amann R, Simon M (2023) Metagenome-assembled genomes reveal greatly expanded taxonomic and functional diversification of the abundant marine Roseobacter RCA cluster. Microbiome 11:265. (doi:10.1186/s40168-023-01644-5)
242. Moon J, Schubert A, Poehlein A, Daniel R, Müller V (2023) A new metabolic trait in an acetogen: Mixed acid fermentation of fructose in a methylene-tetrahydrofolate reductase mutant of Acetobacterium woodii. Environ Microbiol Rep 15(5):339-351. (doi:10.1111/1758-2229.13160)
241. Ponraj DS, Lund M, Lange J, Poehlein A, Himmelbach A, Falstie-Jensen T, Jørgensen NP, Ravn C, Brüggemann H (2023) Shotgun sequencing of sonication fluid for the diagnosis of orthopaedic implant-associated infections with Cutibacterium acnes as suspected causative agent. Front Cell Infect Microbiol 13:1165017. (doi:10.3389/fcimb.2023.1165017)
240. Protasov E, Nonoh JO, Kästle Silva JM, Mies US, Hervé V, Dietrich C, Lang K, Mikulski L, Platt K, Poehlein A, Köhler-Ramm T, Miambi E, Boga HI, Feldewert C, Ngugi DK, Plarre R, Sillam-Dussès D, Šobotník J, Daniel R, Brune A (2023) Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods. Front Microbiol 14:1281628. (doi:10.3389/fmicb.2023.1281628)
239. Schneider D, Ganbarzade A, Post S, Zühlke D, Hinzke T, Hollensteiner J, Poehlein A, Riedel K, Daniel R (2023) Complete genome sequence of Citrobacter braakii GW-Imi-1b1, isolated from hospital wastewater in Greifswald, Germany. Microbiol Resour Announc 12(5):e0014323. (doi:10.1128/mra.00143-23)
238. Schöne C, Poehlein A, Rother M (2023) Genetic and physiological probing of cytoplasmic bypasses for the energy-converting methyltransferase Mtr in Methanosarcina acetivorans. Appl Environ Microbiol 89(7):e0216122. (doi:10.1128/aem.02161-22)
237. Schüler M, Daniel R, Poehlein A (2023) Complete genome sequence of a Clostridioides difficile cryptic C-III strain isolated from horse feces. Microbiol Resour Announc 12(12):00781-23. (doi:10.1128/MRA.00781-23)
236. Strittmatter CS, Poehlein A, Himmelbach A, Daniel R, Steinbüchel A (2023) Medium-chain-length fatty acid catabolism in Cupriavidus necator H16: Transcriptome sequencing reveals differences from long-chain-length fatty acid β-oxidation and involvement of several homologous genes. Appl Environ Microbiol 89(1):e0142822. (doi:10.1128/aem.01428-22)
235. Trischler R, Poehlein A, Daniel R, Müller V (2023) Ethanologenesis from glycerol by the gut acetogen Blautia schinkii. Environ Microbiol 25(12):3577-3591. (doi:10.1111/1462-2920.16517)
234. Zeldes B, Poehlein A, Jain S, Baum C, Daniel R, Müller V, Basen M (2023) DNA uptake from a laboratory environment drives unexpected adaptation of a thermophile to a minor medium component. ISME COMMUN 3:2. (doi:10.1038/s43705-022-00211-7)
233. Afshar M, Møllebjerg A, Minero GA, Hollensteiner J, Poehlein A, Himmelbach A, Lange J, Meyer RL, Brüggemann H (2022) Biofilm formation and inflammatory potential of Staphylococcus saccharolyticus: A possible cause of orthopedic implant-associated infections. Front Microbiol 13:1070201. (doi:10.3389/fmicb.2022.1070201)
232. Aguilar-Cruz Y, Milke F, Leinberger J, Poehlein A, Zotz G, Brinkhoff T (2022) Diversity and putative metabolic function of prokaryotic communities in tank bromeliads along an elevation gradient in tropical Mexico. Front Microbiol 13:945488. (doi:10.3389/fmicb.2022.945488)
231. Ahle CM, Stødkilde C, Poehlein A, Bömeke M, Streit WR, Wenck H,Reuter JH, Hüpeden J, Brüggemann H (2022) Interference and co-existence of staphylococci and Cutibacterium acnes within the healthy human skin microbiome. Commun Biol 5:923. (doi:10.1038/s42003-022-03897-6)
230. Baur ST, Markussen S, Di Bartolomeo F, Poehlein A, Baker A, Jenkinson ER, Daniel R, Wentzel A, Dürre P (2022) Increased butyrate production in Clostridium saccharoperbutylacetonicum from lignocellulose-derived sugars. Appl Environ Microbiol 21:e0241921. (doi:10.1128/aem.02419-21)
229. Baur ST, Poehlein A, Renz NJ, Hollitzer SK, Montoya Solano JD, Schiel-Bengelsdorf B, Daniel R, Dürre P (2022) Modulation of sol mRNA expression by the long non-coding RNA Assolrna in Clostridium saccharoperbutylacetonicum affects solvent formation. Front Genet 13:966643. (doi:10.3389/fgene.2022.966643)
228. Breisch J, Schumm C, Poehlein A, Daniel R, Averhoff B (2022) The carnitine degradation pathway of Acinetobacter baumannii and its role in virulence. Environ Microbiol 24(9):4437-4448. (doi:10.1111/1462-2920.16075)
227. Chacón FI, Sineli PE, Mansilla FI, Pereyra MM, Diaz MA, Volentini SI, Poehlein A, Meinhardt F, Daniel R, Dib JR (2022) Native cultivable bacteria from the blueberry microbiome as novel potential biocontrol agents. Microorganisms 10(5):969. (doi:10.3390/microorganisms10050969)
226. Dlugosch L, Poehlein A, Wemheuer B, Pfeiffer B, Badewien TH, Daniel R, Simon M (2022) Significance of gene variants for the functional biogeography of the near-surface Atlantic Ocean microbiome. Nat Commun 11:1186. (doi:10.1038/s41467-022-28128-8)
225. Gudzuhn M, Alio I, Moll R, de Vries J, Boehlich J, Assmann M, Janneschütz J, Schützenmeister N, Himmelbach A, Poehlein A, Daniel R, Streit WR (2022) Molecular insight into gene response of diorcinol- and rubrolide-treated biofilms of the emerging pathogen Stenotrophomonas maltophilia. Microbiol Spectr 26:e0258221. (doi:10.1128/spectrum.02582-21)
224. Guzman J, Ortúzar M, Poehlein A, Daniel R, Trujillo ME, Vilcinskas A (2022) Agromyces archimandritae sp. nov., isolated from the cockroach Archimandrita tessellata. Int J Syst Evol Microbiol 72(3):005283. (doi:10.1099/ijsem.0.005283)
223. Guzman J, Poehlein A, Glaeser SP, Schwengers O, Blom J, Hollensteiner J, Kämpfer P, Vilcinskas A (2022) Pseudocitrobacter corydidari sp. nov., isolated from the Asian emerald cockroach Corydidarum magnifica. Int J Syst Evol Microbiol 72:005497. (doi:10.1099/ijsem.0.005497)
222. Hertel R, Schöne K, Mittelstädt C, Meißner J, Zschoche N, Collignon M, Kohler C, Friedrich I, Schneider D, Hoppert M, Kuhn R, Schwedt I, Scholz P, Poehlein A, Martienssen M, Ischebeck T, Daniel R, Commichau FM (2022) Characterization of glyphosate-resistant Burkholderia anthina and Burkholderia cenocepacia isolates from a commercial Roundup® solution. Environ Microbiol Rep 14(1):70-84. (doi:10.1111/1758-2229.13022)
221. Kaupper T, Mendes LW, Poehlein A, Frohloff D, Rohrbach S, Horn MA, Ho A (2022) The methane-driven interaction network in terrestrial methane hotspots. Environ Microbiome 17:15. (doi:10.1186/s40793-022-00409-1)
220. Kohm K, Floccari VA, Lutz VT, Nordmann B, Mittelstädt C, Poehlein A, Dragoš A, Commichau FM, Hertel R (2022) The Bacillus phage SPβ and its relatives: a temperate phage model system reveals new strains, species, prophage integration loci, conserved proteins and lysogeny management components. Environ Microbiol 24(4):2098-2118. (doi:10.1111/1462-2920.15964)
219. Leinberger J, Milke F, Christodoulou M, Poehlein A, Caraveo‐Patiño J, Teske A, Brinkhoff T (2022) Microbial epibiotic community of the deep‐sea galatheid squat lobster Munidopsis alvisca. Sci Rep 12:2675. (doi:10.1038/s41598-022-06666-x)
218. Lewkowski O, Poehlein A, Daniel R, Erler S (2022) In the battle of the disease: a transcriptomic analysis of European foulbrood-diseased larvae of the Western honey bee (Apis mellifera). BMC Genomics 23(1):837. (doi:10.1186/s12864-022-09075-6)
217. Papaioannou KK, Hollensteiner J, Witte JKH, Poehlein A, Daniel R (2022) Complete genome sequence of the type strain Aliivibrio fischeri DSM 507. Microbiol Resour Announc 11(12):e00801-22. (doi:10.1128/mra.00801-22)
216. Ponraj DS, Lange J, Falstie-Jensen T, Jørgensen P, Ravn C, Poehlein A, Brüggemann H (2022) Amplicon-based next-generation sequencing as a diagnostic tool for the detection of phylotypes of Cutibacterium acnes in orthopedic implant-associated infections. Front Microbiol 13:866893. (doi:10.3389/fmicb.2022.866893)
215. Rosenbaum FP, Poehlein A, Daniel R, Müller V (2022) Energy-conserving dimethyl sulfoxide reduction in the acetogenic bacterium Moorella thermoacetica. Environ Microbiol 24:2000-2012. (doi:10.1111/1462-2920.15971)
214. Schoch T, Höfele F, Odeh H, Winter L-M, Stöferle S, Karl M, Bengelsdorf F, Poehlein A, Daniel R, Dürre P (2022) Reclassification of Clostridium aurantibutyricum Hellinger 1944 and Clostridium roseum (ex McCoy and McClung 1935) Cato et al. 1988. Int J Syst Evol Microbiol 72:005589. (doi:10.1099/ijsem.0.005589)
213. Schöne C, Poehlein A, Jehmlich N, Adlung N, Daniel R, von Bergen M, Scheller S, Rother M (2022) Deconstructing Methanosarcina acetivorans into an acetogenic archaeon. PNAS 119(2):e2113853119. (doi:10.1073/pnas.2113853119)
212. Shin JH, Bömeke M, Poehlein A, Hollensteiner J (2022) Complete genome sequence of Bacillus frigoritolerans JHS1. Microbiol Resour Announc 11(6):e0018422. (doi:10.1128/mra.00184-22)
211. Wendling CC, Lange J, Liesegang H, Sieber M, Poehlein A, Bunk B, Rajkov J, Goehlich H, Roth O, Brockhurst MA (2022) Higher phage virulence accelerates the evolution of host resistance. Proc R Soc B 289(1984):20221070. (doi:10.1098/rspb.2022.1070)
210. Werner KA, Poehlein A, Schneider D, El-Said K, Wöhrmann M, Linkert I, Hübner T, Brüggemann N, Prost K, Daniel R, Grohmann E (2022) Thermophilic composting of human feces: development of bacterial community composition and antimicrobial resistance gene pool. Front Microbiol 13:824834. (doi:10.3389/fmicb.2022.824834)
209. Werner KA, Schneider D, Poehlein A, Diederich N, Feyen L, Axtmann K, Hübner T, Brüggemann N, Prost K, Daniel R, Grohmann E (2022) Metagenomic insights into the changes of antibiotic resistance and pathogenicity factor pools upon thermophilic composting of human excreta. Front Microbiol 13:826071. (doi:10.3389/fmicb.2022.826071)
208. Zucker F, Bischoff V,Ndela EO, Heyerhoff B, Poehlein A, Freese HM, Roux S, Simon M, Enault F, Moraru Ch (2022) New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria. Virus Evol 8(2):1-18. (doi:10.1093/ve/veac070)
207. Afshar M, Poehlein A, Söderquist B, Brüggemann H (2021) Complete genome sequences of two Staphylococcus saccharolyticus strains isolated from prosthetic joint infections. Microbiol Resour Announc 10(10):e00157-21. (doi:10.1128/MRA.00157-21)
206. Ahle CM, Stødkilde-Jørgensen K, Poehlein A, Streit WR, Hüpeden J, Brüggemann H (2021) Comparison of three amplicon sequencing approaches to determine staphylococcal populations on human skin. BMC Microbiol 21(1):221. (doi:10.1186/s12866-021-02284-1)
205. Alio I, Gudzuhn M, Pérez García P, Danso D, Schoelmerich M, Mamat U, Schaible UE, Steinmann J, Yero D, Gibert I, Kohl TA, Niemann S, Gröschel MI, Haerdter J, Hackl T, Vollstedt CH, Bömeke M, Egelkamp R, Daniel R, Poehlein A, Streit WR (2021) Erratum for "Phenotypic and transcriptomic analysis of seven clinical Stenotrophomonas maltophilia isolates identify a small set of shared and commonly regulated genes involved in biofilm lifestyle". Appl Environ Microbiol 87(18):e0130421. (doi:10.1128/AEM.01304-21)
204. Benda M, Woelfel S, Faßhauer P, Gunka K, Klumpp S, Poehlein A, Kálalová D, Šanderová H, Daniel R, Krásný L, Stülke J (2021) Quasi-essentiality of RNase Y in Bacillus subtilis is caused by its critical role in the control of mRNA homeostasis. Nucleic Acids Res 49(12):7088-7102. (doi:10.1093/nar/gkab528)
203. Faßhauer P, Busche T, Kalinowski J, Mäder U, Poehlein A, Daniel R, Stülke J (2021) Functional redundancy and specialization of the conserved cold shock proteins in Bacillus subtilis. Microorganisms 9(7):1434. (doi:10.3390/microorganisms9071434)
202. Friedrich I, Hollensteiner J, Scherf J, Weyergraf J, Klassen A, Poehlein A, Hertel R, Daniel R (2021) Complete genome sequence of Stenotrophomonas indicatrix DAIF1. Microbiol Resour Announc 10(6):e01484-20. (doi:10.1128/MRA.01484-20)
201. Gerke J, Schneider D, Poehlein A, Cornish VW, Braus GH (2021) Draft genome sequence of Saccharomyces cerevisiae LW2591Y, a laboratory strain for in vivo multigene assemblies. Microbiol Resour Announc 10(9):e01418-20. (doi:10.1128/MRA.01418-20)
200. Göbbels L, Poehlein A, Dumnitch A, Egelkamp R, Kröger C, Haerdter J, Hackl T, Feld A, Weller H, Daniel R, Streit WR, Schoelmerich MC (2021) Cysteine: an overlooked energy and carbon source. Sci Rep 11:2139. (doi:10.1038/s41598-021-81103-z)
199. Guzman J, Sombolestani AS, Poehlein A, Daniel R, Cleenwerck I, Vandamme P, Vilcinskas A (2021) Entomobacter blattae gen. nov., sp. nov., a new member of the Acetobacteraceae isolated from the gut of the cockroach Gromphadorhina portentosa. Int J Syst Evol Microbiol 71(3):. (doi:10.1099/ijsem.0.004666)
198. Hollensteiner J, Friedrich I, Hollstein L, Lamping J-P,Wolf K, Liesegang H, Poehlein A, Hertel R, Daniel R (2021) Complete genome sequence of Kinneretia sp. strain DAIF2, isolated from a freshwater pond. Microbiol Resour Announc 10(8):e00003-21. (doi:10.1128/MRA.00003-21)
197. Krüger L, Herzberg Ch, Rath H, Pedreira T, Ischebeck T, Poehlein A, Gundlach J, Daniel R, Völker U, Mäder U, Stülke J (2021) Essentiality of c-di-AMP in Bacillus subtilis: Bypassing mutations converge in potassium and glutamate homeostasis. PLoS Genetics 17:e1009092. (doi:10.1371/journal.pgen.1009092)
196. Michalik S, Reder A, Richts B, Faßhauer P, Mäder U, Pedreira T, Poehlein A, van Heel AJ, van Tilburg AY, Altenbuchner J, Klewing A, Reuß DR, Daniel R, Commichau FM, Kuipers OP, Hamoen LW, Völker U, Stülke J (2021) The Bacillus subtilis minimal genome compendium. ACS Synth Biol 10(10):2767–2771. (doi:10.1021/acssynbio.1c00339)
195. Migliorini LB, de Sales RO, Koga PCM, Doi AM, Poehlein A, Toniolo AR, Menezes FG, Martino MDV, Gales AC, Brüggemann H, Severino P (2021) Prevalence of blaKPC-2, blaKPC-3 and blaKPC-30—carrying plasmids in Klebsiella pneumoniae isolated in a Brazilian hospital. Pathogens 10(3):332. (doi:10.3390/pathogens10030332)
194. Moon J, Dönig J, Kramer S, Poehlein A, Daniel R, Müller V (2021) Formate metabolism in the acetogenic bacterium Acetobacterium woodii. Environ Microbiol 23(8):4214-4227. (doi:10.1111/1462-2920.15598)
193. Obermeier MM, Wicaksono WA, Taffner J, Bergna A, Poehlein A, Cernava T, Lindstaedt S, Lovric M, Müller Bogotá CA, Berg G (2021) Plant resistome profiling in evolutionary old bog vegetation provides new clues to understand emergence of multi-resistance. ISME J 15:921–937. (doi:10.1038/s41396-020-00822-9)
192. Pereyra MM, Díaz MA, Soliz-Santander FF, Poehlein A, Meinhardt F, Daniel R, Dib JR (2021) Screening methods for isolation of biocontrol epiphytic yeasts against Penicillium digitatum in lemons. J Fungi 7(3):166. (doi:10.3390/jof7030166)
191. Perez MF, Saona LA, Farías ME, Poehlein A, Meinhardt F, Daniel R, Dib JR (2021) Assessment of the plasmidome of an extremophilic microbial community from the Diamante Lake, Argentina. Sci Rep 11:21459. (doi:10.1038/s41598-021-00753-1)
190. Petruschke H, Schori C, Canzler S, Riesbeck S, Poehlein A, Daniel R, Frei D, Segessemann T, Zimmerman J, Marinos G, Kaleta C, Jehmlich N, Ahrens CH, von Bergen M (2021) Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome. Microbiome 9:55. (doi:10.1186/s40168-020-00981-z)
189. Richts B, Lentes S, Poehlein A, Daniel R, Commichau FM (2021) A Bacillus subtilis ΔpdxT mutant suppresses vitamin B6 limitation by acquiring mutations enhancing pdxS gene dosage and ammonium assimilation. Environ Microbiol Rep 13(2):218-233. (doi:10.1111/1758-2229.12936)
188. Rosenbaum FP, Poehlein A, Egelkamp R, Daniel R, Harder S, Schlüter H, Schoelmerich MC (2021) Lactate metabolism in strictly anaerobic microorganisms with a soluble NAD+-dependent l-lactate dehydrogenase. Environ Microbiol 23(8):4661-4672. (doi:10.1111/1462-2920.15657)
187. Sagerfors S, Poehlein A, Afshar M, Lindblad BE, Brüggemann H, Söderquist B (2021) Clinical and genomic features of Corynebacterium macginleyi-associated infectious keratitis. Sci Rep 11:6015. (doi:10.1038/s41598-021-85336-w)
186. Sagerfors S, Poehlein A, Söderquist B, Brüggemann H (2021) Complete genome sequences of two Corynebacterium macginleyi strains isolated from infectious keratitis. Microbiol Resour Announc 10(17):e00207-21. (doi:10.1128/MRA.00207-21)
185. Salar-Vidal L, Achermann I, Aguilera-Correa J-J, Poehlein A, Esteban J, Brüggemann H (2021) Genomic analysis of Cutibacterium acnes strains isolated from prosthetic joint infections. Microorganisms 9(7):1500. (doi:10.3390/microorganisms9071500)
184. Schneider D, Zühlke D, Poehlein A, Riedel K, Daniel R (2021) Metagenome-assembled genome sequences from different wastewater treatment stages in Germany. Microbiol Resour Announc 10(27):e00504-21. (doi:10.1128/MRA.00504-21)
183. Söderquist B, Afshar M, Poehlein A, Brüggemann H (2021) Staphylococcus saccharolyticus associated with prosthetic joint infections: clinical features and genomic characteristics. Pathogens 10(4):397. (doi:10.3390/pathogens10040397)
182. TrifunoviĆ D, Moon J, Poehlein A, Daniel R, Müller V (2021) Growth of the acetogenic bacterium Acetobacterium woodii on glycerol and dihydroxyacetone. Environ Microbiol 23(5):2648-2658. (doi:10.1111/1462-2920.15503)
181. von Hoyningen-Huene AJE, Schlotthauer TJ, Schneider D, Poehlein A, Daniel R (2021) Pontibacillus sp. ALD_SL1 and Psychroflexus sp. ALD_RP9, two novel moderately halophilic bacteria isolated from sediment and water from the Aldabra Atoll, Seychelles. PLoS One 16(8):e0256639. (doi:10.1371/journal.pone.0256639)
180. Wolter LA, Wietz M, Ziesche L, Breider S, Leinberger J, Poehlein A, Daniel R, Schulz S, Brinkhoff T (2021) Pseudooceanicola algae sp. nov., isolated from the marine macroalga Fucus spiralis, shows genomic and physiological adaptations for an algae-associated lifestyle. Syst Appl Microbiol 44(1):126166. (doi:10.1016/j.syapm.2020.126166)
179. Ahle CM, Stødkilde K, Afshar M, Poehlein A, Ogilvie LA, Söderquist B, Hüpeden J, Brüggemann H (2020) Staphylococcus saccharolyticus: An overlooked human skin colonizer. Microorganisms 8(8):1105. (doi:10.3390/microorganisms8081105)
178. Alio I, Gudzuhn M, Pérez García P, Danso D, Schoelmerich M, Mamat U, Schaible UE, Steinmann J, Yero D, Gibert I, Kohl TA, Niemann S, Gröschel MI, Haerdter J, Hackl T, Vollstedt CH, Bömeke M, Egelkamp R, Daniel R, Poehlein A, Streit WR (2020) Phenotypic and transcriptomic analysis of seven clinical Stenotrophomonas maltophilia isolates identify a small set of shared and commonly regulated genes involved in biofilm lifestyle. Appl Environ Microbiol 86:e02038-20. (doi:10.1128/AEM.02038-20)
177. Czieborowski M, Hübenthal A, Poehlein A, Vogt I, Philipp B (2020) Genetic and physiological analysis of biofilm formation on different plastic surfaces by Sphingomonas sp. strain S2M10 reveals an essential function of sphingan biosynthesis. Microbiol 166(10):918-935. (doi:10.1099/mic.0.000961)
176. Flaiz M, Baur T, Brahner S, Poehlein A, Daniel R, Bengelsdorf FR (2020) Caproicibacter fermentans gen. nov., sp. nov., a new caproate- producing bacterium and emended description of the genus Caproiciproducens. Int J Syst Evol Microbiol 70(7):4269–4279. (doi:10.1099/ijsem.0.004283)
175. Friedrich I, Hollensteiner J, Schneider D, Poehlein A, Hertel R, Daniel R (2020) First complete genome sequences of Janthinobacterium lividum EIF1 and EIF2 and their comparative genome analysis. Genome Biol Evol 12(10):1782-1788. (doi:10.1093/gbe/evaa148)
174. Gerke J, Frauendorf H, Schneider D, Wintergoller M, Hofmeister T, Poehlein A, Zebec Z, Takano E, Scrutton NS, Braus GH (2020) Production of the fragrance geraniol in peroxisomes of a product-tolerant baker's yeast. Front Bioeng Biotechnol 8:582052. (doi:10.3389/fbioe.2020.582052)
173. Hetz SA, Poehlein A, Horn MA (2020) Whole-genome sequences of two new Caballeronia strains isolated from cryoturbated peat circles of the permafrost-affected eastern european tundra. Microbiol Resour Announc 9(31):e00731-20. (doi:10.1128/MRA.00731-20)
172. Ho A, Mendes LW, Lee HJ, Kaupper T, Mo Y, Poehlein A, Bodelier PLE, Jia Z, Horn M (2020) Response of a methane-driven interaction network to stressor intensification. FEMS Microbiol Ecol 96(10):fiaa180. (doi:10.1093/femsec/fiaa180)
171. Hollensteiner J, Poehlein A, Kloskowski P, Tammam Ali T, Daniel R (2020) Genome sequence of Komagataeibacter saccharivorans strain JH1, isolated from fruit flies. Microbiol Resour Announc 9(13):e00098-20. (doi:10.1128/MRA.00098-20)
170. Hollensteiner J, Schneider D, Poehlein A, Daniel R (2020) Complete genome of Roseobacter ponti DSM 106830T. Genome Biol Evol 12(7):1013-1018. (doi:10.1093/gbe/evaa114)
169. Kaupper T, Mendes LW, Lee HJ, Mo Y, Poehlein A, Jia Z, Horn MA, Ho A (2020) When the going gets tough: Emergence of a complex methane-driven interaction network during recovery from desiccation-rewetting. Soil Biol Biochem 153:108109. (doi:10.1016/j.soilbio.2020.108109)
168. Klewing A, Koo BM , Krüger L, Poehlein A, Reuß D, Daniel R, Gross CA, Stülke J (2020) Resistance to serine in Bacillus subtilis: identification of the serine transporter YbeC and of a metabolic network that links serine and threonine metabolism. Environ Microbiol 22(8):3937-3949. (doi:10.1111/1462-2920.15179)
167. Krüger L, Herzberg C, Warneke R, Poehlein A, Stautz J, Weiß M, Daniel R, Hänelt I, Stülke J (2020) Two ways to convert a low- to a high-affinity potassium channel: Control of Bacillus subtilis KtrCD by glutamate. J Bacteriol 202(12):e00138-20. (doi:10.1128/JB.00138-20)
166. Nacke H, Kirck LL,Schwarz S, Schneider D, Poehlein A, Daniel R (2020) Metagenome sequences of a wastewater treatment plant digester sludge-derived enrichment culture. Microbiol Resour Announc 9(32):e00712-20. (doi:10.1128/MRA.00712-20)
165. Perez MF, Kurth D, Farías ME, Soria MN, Castillo Villamizar GA, Poehlein A, Daniel R, Dib JR (2020) First report on the plasmidome from a high-altitude lake of the Andean Puna. Front Microbiol 11:1343. (doi:10.3389/fmicb.2020.01343)
164. Poehlein A, Hollensteiner J, Dreyer A, Gavrilova I, Daniel R (2020) Complete genome sequence of Sporomusa termitida DSM 4440T. Microbiol Resour Announc 9(11):e00046-20. (doi:10.1128/MRA.00046-20)
163. Protasov E, Reeh H, Liu P, Poehlein A, Platt K, Heimerl T, Hervé V, Daniel R, Brune A (2020) Genome reduction in novel, obligately methyl-reducing Methanosarcinales isolated from arthropod guts (Methanolapillus gen. nov. and Methanimicrococcus). FEMS Microbiol Ecol 100(9):fiae111. (doi:10.1093/femsec/fiae111)
162. Redl S, Poehlein A, Esser C, Bengelsdorf FR, Jensen TØ, Jendresen CB, Tindall BJ, Daniel R, Dürre P, Nielsen AT (2020) Genome-based comparison of all species of the genus Moorella, and status of the species Moorella thermoacetica and Moorella thermoautotrophica. Front Microbiol 10:3070. (doi:10.3389/fmicb.2019.03070)
161. Richts B, Hertel R, Potot S, Poehlein A, Daniel R, Schyns G, Pragai Z, Commichau FM (2020) Complete genome sequence of the prototrophic Bacillus subtilis subsp. subtilis strain SP1. Microbiol Resour Announc 9(32):e00825-20. (doi:10.1128/MRA.00825-20)
160. Salgar-Chaparro SJ, Castillo-Villamizar G, Poehlein A, Daniel R, Machuca LL (2020) Complete genome sequence of Pseudomonas balearica strain EC28, an iron-oxidizing bacterium isolated from corroded steel. Microbiol Resour Announc 9(19):e00275-20. (doi:10.1128/MRA.00275-20)
159. Salgar-Chaparro SJ, Castillo-Villamizar G, Poehlein A, Daniel R, Machuca LL (2020) Draft genome sequence of Enterobacter roggenkampii strain OS53, isolated from corroded pipework at an offshore oil production facility. Microbiol Resour Announc 9(34):e00583-20. (doi:10.1128/MRA.00583-20)
158. Salgar-Chaparro SJ, Castillo-Villamizar G, Poehlein A, Daniel R, Machuca LL (2020) Complete genome sequence of Shewanella chilikensis strain DC57, isolated from corroded seal rings at a floating oil production system in Australia. Microbiol Resour Announc 9(38):e00584-20. (doi:10.1128/MRA.00584-20)
157. Schneider D, Aßmann N, Wicke D, Poehlein A, Daniel R (2020) Metagenomes of wastewater at different treatment stages in Central Germany. Microbiol Resour Announc 9(15):e00201-20. (doi:10.1128/MRA.00201-20)
156. Schneider D, Zühlke D, Petscheleit T, Poehlein A, Riedel K, Daniel R (2020) Complete genome sequence of Escherichia coli GW-AmxH19, isolated from hospital wastewater in Greifswald, Germany. Microbiol Resour Announc 9(21):e00279-20. (doi:10.1128/MRA.00279-20)
155. Schüler MA, Stegmann BA, Poehlein A, Daniel R, Dürre P (2020) Genome sequence analysis of the temperate bacteriophage TBP2 of the solvent producer Clostridium saccharoperbutylacetonicum N1-4 (HMT, ATCC 27021). FEMS Microbiol Lett 367(14):fnaa103. (doi:10.1093/femsle/fnaa103)
154. Stødkilde K, Poehlein A, Brüggemann H (2020) Draft genome sequence of a new Staphylococcal species isolated from human skin. Microbiol Resour Announc 9(6):e01499-19. (doi:10.1128/MRA.01499-19)
153. Willms IM, Rudolph AY, Göschel I, Bolz SH, Schneider D, Penone C, Poehlein A, Schöning I, Nacke H (2020) Globally abundant “Candidatus Udaeobacter” benefits from release of antibiotics in soil and potentially performs trace gas scavenging. mSphere 5(4):e00186-20. (doi:10.1128/mSphere.00186-20)
152. Winkler L, Münker MF, Brunotte S, Rohlmann L, Alfageme AD, Poehlein A, Hoppert M, Reitner J, Nacke H (2020) Metagenome-assembled genome sequences from an anoxygenic photosynthetic consortium involved in sulfur cycling. Microbiol Resour Announc 9(38):e00819-20. (doi:10.1128/MRA.00819-20)
151. Wischer D, Schneider D, Poehlein A, Herrmann F, Oruc H, Meinhardt J, Wagner O, Kharin S, Novikova N, Haag R, Daniel R, Grohmann E (2020) Novel antimicrobial cellulose fleece inhibits growth of human-derived biofilm-forming Staphylococci during the SIRIUS19 simulated space mission. Front Microbiol 11:1626. (doi:10.3389/fmicb.2020.01626)
150. Wübbeler JH, Oppermann-Sanio FB, Ockenfels A, Röttig A, Osthaar-Ebker A, Verbarg S, Poehlein A, Madkour MH, Al-Ansari AM, Almakishah NH, Daniel R, Steinbüchel A (2020) Corrigendum: Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil. Int J Syst Evol Microbiol 70(4):2955. (doi:10.1099/ijsem.0.004039)
149. Bengelsdorf FR, Poehlein A, Daniel R, Dürre P (2019) Genome sequence of the caproic acid-producing bacterium Caproiciproducens galactitolivorans BS-1(T) (JCM 30532). Microbiol Resour Announc 8(31):e00346-19. (doi:10.1128/MRA.00346-19)
148. Bischoff V, Bunk B, Meier-Kolthoff JP, Spröer C, Poehlein A, Dogs M, Nguyen M, Petersen J, Daniel R, Overmann J, Göker M, Simon M, Brinkhoff T, Moraru C (2019) Cobaviruses – a new globally distributed phage group infecting Rhodobacteraceae in marine ecosystems. ISME J 13:1404–1421. (doi:10.1038/s41396-019-0362-7)
147. Brüggemann H, Poehlein A, Brzuszkiewicz E, Scavenius C, Enghild JJ, Al-Zeer MA, Brinkmann V, Jensen A, Söderquist B (2019) Staphylococcus saccharolyticus isolated from blood cultures and prosthetic joint infections exhibits excessive genome decay. Front Microbiol 10:478. (doi:10.3389/fmicb.2019.00478)
146. Große C, Poehlein A, Blank K, Schwarzenberger C, Schleuder G, Herzberg M, Nies DH (2019) The third pillar of metal homeostasis in Cupriavidus metallidurans CH34: preferences are controlled by extracytoplasmic function sigma factors. Metallomics 11(2):291-316. (doi:10.1039/C8MT00299A)
145. Gundlach J, Krüger L, Herzberg C, Turdiev A, Poehlein A, Tascón I, Weiß M, Hertel D, Daniel R, Hänelt I, Lee VT, Stülke J (2019) Sustained sensing in potassium homeostasis: Cyclic di-AMP controls potassium uptake by KimA at the levels of expression and activity. J Biol Chem 294(24):9605-9614. (doi:10.1074/jbc.RA119.008774)
144. Hollensteiner J, Poehlein A, Daniel R (2019) Complete genome sequence of Marinobacter sp. strain JH2, isolated from seawater of the Kiel Fjord. Microbiol Resour Announc 8(30):e00596-19. (doi:10.1128/MRA.00596-19)
143. Pinter N, Hach CA, Hampel M, Rekhter D, Zienkiewicz K, Feussner I, Poehlein A, Daniel R, Finkernagel F, Heimel K (2019) Signal peptide peptidase activity connects the unfolded protein response to plant defense suppression by Ustilago maydis. PLoS Pathogens 15:e1007734. (doi:10.1371/journal.ppat.1007734)
142. Reuß DR, Faßhauer P, Mroch PJ, Ul-Haq I, Koo BM, Poehlein A, Gross CA, Daniel R, Brantl S, Stülke J (2019) Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis. Nucleic Acids Res 47(10):5231–5242. (doi:10.1093/nar/gkz260)
141. Wicke D, Schulz LM, Lentes S, Scholz P, Poehlein A, Gibhardt J, Daniel R, Ischebeck T, Commichau FM (2019) Identification of the first glyphosate transporter by genomic adaptation. Environ Microbiol 21(4):1287-1305. (doi:10.1111/1462-2920.14534)
140. Yücel O, Borgert SR, Poehlein A, Niermann K, Philipp B (2019) The 7α-hydroxysteroid dehydratase Hsh2 is essential for anaerobic degradation of the steroid skeleton of 7α-hydroxyl bile salts in the novel denitrifying bacterium Azoarcus sp. strain Aa7. Environ Microbiol 21(2):800-813. (doi:10.1111/1462-2920.14508)
139. Amiri Moghaddam J, Crüsemann M, Alanjar M, Harms H, Céspedes AD-C, Blom J, Poehlein A, Ziemert N, König GM, Schäberle TF (2018) Analysis of the genome and metabolome of marine myxobacteria reveals high potential for biosynthesis of novel specialized metabolites. Sci Rep 8:16600. (doi:10.1038/s41598-018-34954-y)
138. Amiri Moghaddam J, Poehlein A, Fisch K, Alanjary M, Daniel R, König GM, Schäberle TF (2018) Draft genome sequences of the obligatory marine myxobacterial strains Enhygromyxa salina SWB005 and SWB007. Genome Announc 6(17):e00324-18. (doi:10.1128/genomeA.00324-18)
137. Bakenhus I, Voget S, Poehlein A, Brinkhoff T, Daniel R, Simon M (2018) Genome sequence of Planktotalea frisia type strain (SH6-1T), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom. Stand Genomic Sci 13:7. (doi:10.1186/s40793-018-0311-5)
136. Bengelsdorf FR, Beck MH, Erz C, Hoffmeister S, Karl MM, Riegler P, Wirth S, Poehlein A, Weuster-Botz D, Dürre P (2018) Bacterial anaerobic synthesis gas (syngas) and CO2+H2 fermentation. Adv Appl Microbiol 103:143-221 . (doi:10.1016/bs.aambs.2018.01.002)
135. Brüggemann H, Jensen A, Nazipi S, Aslan H, Meyer RL, Poehlein A, Brzuszkiewicz E, Al-Zeer MA, Brinkmann V, Söderquist B (2018) Pan-genome analysis of the genus Finegoldia identifies two distinct clades, strain-specific heterogeneity, and putative virulence factors. Sci Rep 8:266. (doi:10.1038/s41598-017-18661-8)
134. Brüggemann H, Migliorini LB, Oliveira de Sales R, Mariko Koga PC, de Souza AV, Jensen A, Poehlein A, Brzuszkiewicz E, Doi AM, Pasternak J, Martino MDV, Severino P (2018) Comparative genomics of non-outbreak Pseudomonas aeruginosa strains underlines genome plasticity and geographic relatedness of the global clone ST235. Genome Biol Evol 10(7):1852-1857. (doi:10.1093/gbe/evy139)
133. Dib JR, Perez MF, Schuldes J, Poehlein A, Wagenknecht M, Farías ME, Meinhardt F, Daniel R (2018) Complete genome sequences of pLMA1 and pLMA7, two large linear plasmids of Micrococcus strains isolated from a high-altitude lake in Argentina. Genome Announc 6(8):e00010-18. (doi:10.1128/genomeA.00010-18)
132. Djukic M, Erler S, Leimbach A, Grossar D, Charrière J-D, Gauthier L, Hartken D, Dietrich S, Nacke H, Daniel R, Poehlein A (2018) Comparative genomics and description of putative virulence factors of Melissococcus plutonius, the causative agent of European foulbrood disease in honey bees. Genes 9:419. (doi:10.3390/genes9080419)
131. Erler S, Lewkowski O, Poehlein A, Forsgren E (2018) The curious case of Achromobacter eurydice, a Gram-variable pleomorphic bacterium associated with European Foulbrood disease in honeybees. Microb Ecol 75(1):1-6. (doi:10.1007/s00248-017-1007-x)
130. Groß U, Brzuszkiewicz E, Gunka K, Starke J, Riedel T, Bunk B, Spröer C, Wetzel D, Poehlein A, Chibani C, Bohne W, Overmann J, Zimmermann O, Daniel R, Liesegang H (2018) Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile. BMC Genomics 19:1. (doi:10.1186/s12864-017-4368-0)
129. Hollensteiner J, Poehlein A, Granzow S, Liesegang H, Daniel R, Vidal S, Wemheuer F (2018) Draft genome sequence of the endophyte Bacillus mycoides strain GM5LP isolated from Lolium perenne. Genome Announc 6(4):e01517. (doi:10.1128/genomeA.01517-17)
128. Kremp F, Poehlein A, Daniel R, Müller V (2018) Methanol metabolism in the acetogenic bacterium Acetobacterium woodii. Environ Microbiol 20(12):4369-4384. (doi:10.1111/1462-2920.14356)
127. Meinert C, Schürmann M, Domeyer JE, Poehlein A, Daniel R, Steinbüchel A (2018) The unexpected function of a Flavin-dependent oxidoreductase (Fox) from Variovorax paradoxus TBEA6. FEMS Microbiol Lett 365(6):fny011. (doi:10.1093/femsle/fny011)
126. Nasfi Z, Poehlein A, Harms H, Goralski E, Fisch KM, Daniel R, König GM, Schäberle TF, Bachoual R (2018) Draft genome sequence of Bacillus sp. strain M21, isolated from the arid area of Matmata, Tunisia. Genome Announc 6(17):e00323-18. (doi:10.1128/genomeA.00323-18)
125. Poehlein A, Böer T, Steensen K, Daniel R (2018) Draft genome sequence of the hydrogenogenic carboxydotroph Moorella stamsii DSM 26271. Genome Announc 6(18):e00345-18. (doi:10.1128/genomeA.00345-18)
124. Poehlein A, Bolz S, Fischer B, Daniel R (2018) First insight into the genome sequence of Clostridium vincentii DSM 10228, isolated from sediment of the McMurdo Ice Shelf, Antarctica. Genome Announc 6(16):e00334-18. (doi:10.1128/genomeA.00334-18)
123. Poehlein A, Bremekamp R, Lutz VT, Schulz LM, Daniel R (2018) Draft genome sequence of the butanoic acid-producing bacterium Clostridium luticellarii DSM 29923, used for strong aromatic Chinese liquor production. Genome Announc 6(18):e00377-18. (doi:10.1128/genomeA.00377-18)
122. Poehlein A, Hettwer E, Mohnike L, Daniel R (2018) First insights into the genome sequence of Clostridium thermopalmarium DSM 5974, a butyrate-producing bacterium isolated from palm wine. Genome Announc 6(17):e00338-18. (doi:10.1128/genomeA.00338-18)
121. Poehlein A, Heym D, Quitzke V, Fersch J, Daniel R, Rother M (2018) Complete genome sequence of the Methanococcus maripaludis type strain JJ (DSM 2067), a model for selenoprotein synthesis in Archaea. Genome Announc 6(14):e00237-18. (doi:10.1128/genomeA.00237-18)
120. Poehlein A, Hollensteiner J, Granzow S, Wemheuer B, Vidal S, Wemheuer F (2018) First insights into the draft genome sequence of the endophyte Paenibacillus sp. strain GM1FR, isolated from Festuca rubra. Genome Announc 6(4):e01516. (doi:10.1128/genomeA.01516-17)
119. Poehlein A, Keyl A, Milsch JC, Daniel R (2018) Draft genome sequence of the thermophilic acetogen Moorella humiferrea DSM 23265. Genome Announc 6(17):e00357-18. (doi:10.1128/genomeA.00357-18)
118. Poehlein A, Neubauer H, Niemeyer P, Daniel R (2018) First insight into the genome sequence of Clostridium liquoris DSM 100320, a butyrate- and ethanol-producing bacterium. Genome Announc 6(18):e00376-18. (doi:10.1128/genomeA.00376-18)
117. Poehlein A, Schneider D, Soh M, Daniel R, Seedorf H (2018) Comparative genomic analysis of members of the genera Methanosphaera and Methanobrevibacter reveals distinct clades with specific potential metabolic functions. Archaea 2018:Article ID 7609847. (doi:10.1155/2018/7609847)
116. Ullrich SR, Poehlein A, Levicánc G, Mühling M, Schlömann M (2018) Iron targeted transcriptome study draws attention to novel redox protein candidates involved in ferrous iron oxidation in “Ferrovum” sp. JA12. Res Microbiol 169(20):618-627. (doi:10.1016/j.resmic.2018.05.009)
115. Wemheuer F, Hollensteiner J, Poehlein A, Liesegang H, Daniel R, Wemheuer B (2018) Draft genome sequence of the endophyte Bacillus mycoides strain GM6LP isolated from Lolium perenne. Genome Announc 6(5):e00011. (doi:10.1128/genomeA.00011-18)
114. Wemheuer F, Wemheuer B, Hollensteiner J, Daniel R, Poehlein A (2018) Draft genome sequence of the endophyte Paenibacillus sp. strain GM2FR isolated from Festuca rubra. Genome Announc 6(6):e00017. (doi:10.1128/genomeA.00017-18)
113. Zhang Q, Poehlein A, Hollensteiner J, Daniel R (2018) Draft genome sequence of Komagataeibacter maltaceti LMG 1529T, a vinegar-producing acetic acid bacterium isolated from malt vinegar brewery acetifiers. Genome Announc 6(16):e00330-18. (doi:10.1128/genomeA.00330-18)
112. Bengelsdorf F, Poehlein A, Flitsch SK, Linder S, Schiel-Bengelsdorf B, Stegmann BA, Krabben P, Green E, Zhang Y, Minton N, Dürre P (2017) Host organisms: Clostridium acetobutylicum / Clostridium beijerinckii and related organisms. In: Industrial Biotechnology: Microorganisms; Wittman C & Liao JC (Eds), Part III - Exploiting anaerobic biosynthetic power, Chapter 9. (doi:10.1002/9783527807796.ch9)
111. Chibani CM, Poehlein A, Roth O, Liesegang H, Wendling CC (2017) Draft genome sequence of Vibrio splendidus DSM 19640. Genome Announc 5(48):e01368. (doi:10.1128/genomeA.01368-17)
110. Davidsson S, Carlsson J, Mölling P, Gashi N, Andren O, Andersson S-O, Brzuszkiewicz E, Poehlein A, Al-Zeer M, Brinkmann V, Scavenius C, Nazipi S, Söderquist B, Brüggemann H (2017) Prevalence of Flp pili-encoding plasmids in Cutibacterium acnes isolates obtained from prostatic tissue. Front Microbiol 8:2241. (doi:10.3389/fmicb.2017.02241)
109. Gabris C, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2017) Genome sequence of Enterococcus faecalis strain CG_E. Genome Announc 5(2):e01488-16. (doi:10.1128/genomeA.01488-16)
108. Gabris C, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2017) Genome sequence of Lactobacillus sunkii strain CG_D. Genome Announc 5(2):e01487-16. (doi:10.1128/genomeA.01487-16)
107. Harms H, Poehlein A, Thürmer A, König GM, Schäberle TF (2017) Draft genome sequence of Zobellia sp. strain OII3, isolated from the coastal zone of the Baltic Sea. Genome Announc 5(36):e00737-17. (doi:10.1128/genomeA.00737-17)
106. Hollensteiner J, Poehlein A, Daniel R, Liesegang H, Vidal S, Wemheuer F (2017) Draft genome sequence of Bacillus pumilus strain GM3FR, an endophyte isolated from aerial plant tissues of Festuca rubra L. Genome Announc 5(13):e00085-17. (doi:10.1128/genomeA.00085-17)
105. Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosenstiel P, Schulenburg H, Liesegang H (2017) Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18247. J Biotechnol 260:48-52. (doi:10.1016/j.jbiotec.2017.09.003)
104. Hollensteiner J, Poehlein A, Spröer C, Bunk B, Sheppard AE, Rosentstiel P, Schulenburg H, Liesegang H (2017) Complete genome sequence of the nematicidal Bacillus thuringiensis MYBT18246. Stand Genomic Sci 12:48. (doi:10.1186/s40793-017-0259-x)
103. Hollensteiner J, Wemheuer F, Harting R, Kolarzyk A, Verlerio-Diaz S, Poehlein A, Brzuszkiewicz E, Nesemann K, Braus-Stromeyer S, Braus G, Daniel R, Liesegang H (2017) Bacillus thuringiensis and Bacillus weihenstephanensis inhibit the growth of phytopathogenic Verticillium species. Front Microbiol 7:2171. (doi:10.3389/fmicb.2016.02171)
102. Humphreys JR, Daniel R, Poehlein A (2017) Insights into the genome of the anaerobic acetogen Sporomusa silvacetica DSM 10669. Genome Announc 5(38):e00983-17. (doi:10.1128/genomeA.00983-17)
101. Humphreys JR, Daniel R, Poehlein A (2017) Genome sequence of the homoacetogenic, Gramn-negative, endospore-forming bacterium Sporomusa acidovorans DSM 3132. Genome Announc 5(38):e00981-17. (doi:10.1128/genomeA.00981-17)
100. Jag V, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2017) Genome sequencing and description of Oerskovia enterophila VJag, an agar- and cellulose-degrading bacterium. Stand Genomic Sci 12:30. (doi:10.1186/s40793-017-0244-4)
99. Karl MM, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2017) Complete genome sequence of the autotrophic acetogen Clostridium formicaceticum DSM 92T using nanopore and Illumina sequencing data. Genome Announc 5(21):e00423-17. (doi:10.1128/genomeA.00423-17)
98. Leimbach A, Poehlein A, Vollmers J, Görlich D, Daniel R, Dobrindt U (2017) No evidence for a bovine mastitis Escherichia coli pathotype. BMC Genomics 18:359. (doi:10.1186/s12864-017-3739-x)
97. Nacke H, Daniel R, Poehlein A (2017) Genome sequence of creatinine-fermenting Tissierella creatinophila strain KRE 4T (DSM 6911). Genome Announc 5(12):e00051-17. (doi:10.1128/genomeA.00051-17)
96. Poehlein A, Anbalagan A, Nagel A, Daniel R (2017) First insight into the genome sequence of Clostridium thermobutyricum DSM 4928, a butyrate-producing moderate thermophile. Genome Announc 5(20):e00367-17. (doi:10.1128/genomeA.00367-17)
95. Poehlein A, Berg A, Welsing G, Daniel R (2017) First insights into the genome sequence of the alkaliphilic thermotolerant bacterium Clostridium thermoalcaliphilum JW/YL23-2(T). Genome Announc 5(20):e00368-17. (doi:10.1128/genomeA.00368-17)
94. Poehlein A, Daniel R, Seedorf H (2017) The draft genome of the non-host-associated Methanobrevibacter arboriphilus strain DH1 encodes a large repertoire of adhesin-like proteins. Archaea 2017:Article ID 4097425. (doi:10.1155/2017/4097425)
93. Poehlein A, Daniel R, Thürmer A, Bollinger A, Thies S, Katzke N, Jaeger KE (2017) First insights into the genome sequence of Pseudomonas oleovorans DSM 1045. Genome Announc 5(32):e00774-17. (doi:10.1128/genomeA.00774-17)
92. Poehlein A, Funkner K, Schüler MA, Daniel R (2017) First insights into the genome sequence of the cellulolytic bacterium Clostridium hungatei DSM 14427. Genome Announc 5(20):e00363-17. (doi:10.1128/genomeA.00363-17)
91. Poehlein A, Galperin MY, Andreesen JR, Daniel R (2017) Genome sequence of uric acid-fermenting Eubacterium angustum DSM 1989T (MK-1). Genome Announc 5(2):e01439-16. (doi:10.1128/genomeA.01439-16)
90. Poehlein A, Gippert AL, Bierenbroodspot MJ, Daniel R (2017) First insights into the genome sequence of Clostridium oryzae DSM 28571, isolated from the soil of a Japanese rice field. Genome Announc 5(24):e00539-17. (doi:10.1128/genomeA.00539-17)
89. Poehlein A, Höche N, Mehr A, Daniel R (2017) First insights into the genome of the Cr(VI)-reducing bacterium Clostridium chromiireducens DSM 23318. Genome Announc 5(22):e00420-17. (doi:10.1128/genomeA.00420-17)
88. Poehlein A, Montoya Solano JD, Flitsch SK, Krabben P, Winzer K, Reid SJ, Jones DT, Green E, Minton NP, Daniel R, Dürre P (2017) Microbial solvent formation revisited by comparative genome analysis. Biotechnol Biofuels 10:58. (doi:10.1186/s13068-017-0742-z)
87. Poehlein A, Najdenski H, Simeonova DD (2017) Draft genome sequence of Flavobacterium succinicans strain DD5b. Genome Announc 5(2):e01492-16. (doi:10.1128/genomeA.01492-16)
86. Poehlein A, Najdenski H, Simeonova DD (2017) Draft genome sequence of Klebsiella pneumoniae subsp. pneumoniae ATCC 9621. Genome Announc 5(12):e01718-16. (doi:10.1128/genomeA.01718-16)
85. Poehlein A, Wübbeler JH, Daniel R, Steinbüchel A (2017) Draft genome sequences of Sphingomonas mucosissima DSM 17494 and Sphingomonas dokdonensis DSM 21029. Genome Announc 5(35):e00889-17. (doi:10.1128/genomeA.00889-17)
84. Poehlein A, Yutin N, Daniel R, Galperin MY (2017) Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and Andreesen 1985) as Andreesenia angusta gen. nov. comb. nov. in the family Gottschalkiaceae fam. nov.. Int J Syst Evol Microbiol 67(8):2711-2719. (doi:10.1099/ijsem.0.002008)
83. Villamizar GAC, Daniel R, Poehlein A (2017) First insights into the genome sequence of the strictly anaerobic homoacetogenic Sporomusa sphaeroides strain E (DSM 2875). Genome Announc 5(12):e00037-17. (doi:10.1128/genomeA.00037-17)
82. Wemheuer F, Hollensteiner J, Poehlein A, Granzow S, Daniel R, Vidal S, Wemheuer B (2017) Draft genome sequence of Pseudomonas putida strain GM4FR, an endophytic bacterium isolated from Festuca rubra L. Genome Announc 5(13):e00086-17. (doi:10.1128/genomeA.00086-17)
81. Wübbeler JH, Oppermann-Sanio FB, Ockenfels A, Röttig A, Osthaar-Ebker A, Verbarg S, Poehlein A, Madkour MH, Al-Ansari AM, Almakishah NH, Daniel R, Steinbüchel A (2017) Sphingomonas jeddahensis sp. nov., isolated from Saudi Arabian desert soil. Int J Syst Evol Microbiol 67(10):4057-4063. (doi:10.1099/ijsem.0.002249)
80. Beck MH, Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Dürre P (2016) Draft genome sequence of the strict anaerobe Clostridium neopropionicum X4 (DSM 3847T). Genome Announc 4(2):e00209-16. (doi:10.1128/genomeA.00209-16)
79. Bengelsdorf FR, Poehlein A, Linder S, Erz C, Hummel T, Hoffmeister S, Daniel R, Dürre P (2016) Industrial acetogenic biocatalysts: a comparative metabolic and genomic analysis. Front Microbiol 7:1036. (doi:10.3389/fmicb.2016.01036)
78. Bengelsdorf FR, Poehlein A, Schiel-Bengelsdorf B, Daniel R, Dürre P (2016) Genome sequence of the acetogenic bacterium Butyribacterium methylotrophicum DSM 3468T. Genome Announc 4(6):e01338-16. (doi:10.1128/genomeA.01338-16)
77. Billerbeck S, Wemheuer B, Voget S, Poehlein A, Giebel H-A, Brinkhoff T, Gram L, Jeffrey WH, Daniel R, Simon M (2016) Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage. Nat Microbiol 1:16063. (doi:10.1038/nmicrobiol.2016.63)
76. Castillo Villamizar GA, Poehlein A (2016) Genome sequence of the acetogenic bacterium Morello milder DSM 14980T. Genome Announc 4(3):e00444-16. (doi:10.1128/genomeA.00444-16)
75. Flüchter S, Poehlein A, Schiel-Bengelsdorf B, Daniel R, Dürre P (2016) Genome sequence of the Poly-3-hydroxybutyrate producer Clostridium acetireducens DSM 10703. Genome Announc 4(6):e01399-16. (doi:10.1128/genomeA.01399-16)
74. Giebel H-A, Klotz F, Voget S, Poehlein A, Grosser K, Teske A, Brinkhoff T (2016) Draft genome sequence of the marine Rhodobacteraceae strain O3.65, cultivated from oil-polluted seawater of the Deepwater Horizon oil spill. Stand Genomic Sci 11(1):81. (doi:10.1186/s40793-016-0201-7)
73. Haack FS, Poehlein A, Kröger C, Voigt CA, Piepenbring M, Bode HB, Daniel R, Schäfer W and Streit WR (2016) Molecular keys to the Janthinobacterium and Duganella spp. interaction with the plant pathogen Fusarium graminearum. Front Microbiol 7:1668. (doi:10.3389/fmicb.2016.01668)
72. Jag V, Poehlein A, Bengelsdorf FR, Daniel R, Dürre P (2016) Genome sequence of the facultative anaerobe Oerskovia enterophila DFA-19 (DSM 43852T). Genome Announc 4(5):e00973-16. (doi:10.1128/genomeA.00973-16)
71. Khairy H, Meinert C, Wübbeler JH, Poehlein A, Daniel R, Voigt B, Riedel K, Steinbüchel A (2016) Genome and proteome analysis of Rhodococcus erythropolis MI2: Elucidation of the 4,4´-dithiodibutyric acid catabolism. PLoS ONE 11(12):e0167539. (doi:10.1371/journal.pone.0167539)
70. König S, Gros O, Heiden SE, Hinzke T, Thürmer A, Poehlein A, Meyer S, Vatin M, Mbéguié-A-Mbéguié D, Tocny J, Ponnudurai R, Daniel R, Becher D, Schweder T, Markert S (2016) Nitrogen fixation in a chemoautotrophic lucinid symbiosis. Nat Microbiol 1:16193. (doi:10.1038/nmicrobiol.2016.193)
69. Leimbach A, Poehlein A, Witten A, Wellnitz O, Shpigel N, Petzl W, Zerbe H, Daniel R, Dobrindt U (2016) Whole-genome draft sequences of six commensal fecal and six mastitis-associated Escherichia coli strains of bovine origin. Genome Announc 4(4):e00753-16. (doi:10.1128/genomeA.00753-16)
68. Mühling M, Poehlein A, Stuhr A, Voitel M, Daniel R and Schlömann M (2016) Reconstruction of the metabolic potential of acidophilic Sideroxydans strains from the metagenome of an microaerophilic enrichment culture of acidophilic iron-oxidizing bacteria from a pilot plant for the treatment of acid mine drainage reveals metabolic versatility and adaptation to life at low pH. Front Microbiol 7:2082. (doi:10.3389/fmicb.2016.02082)
67. Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Dürre P (2016) Genome sequence of the acetogenic bacterium Acetobacterium wieringae DSM 1911T. Genome Announc 4(6):e01430-16. (doi:10.1128/genomeA.01430-16)
66. Poehlein A, Freese H, Daniel R, Simeonova DD (2016) Genome sequence of Shigella sp. strain DD12, isolated from homogenized guts of starved Daphnia magna. Stand Genomic Sci 11(1):14. (doi:10.1186/s40793-015-0129-3)
65. Poehlein A, Friedrich I, Krüger L, Daniel R (2016) First insights into the genome of the moderately thermophilic bacterium Clostridium tepidiprofundi SG 508T. Genome Announc 4(3):e00379-16. (doi:10.1128/genomeA.00379-16)
64. Poehlein A, Mucek K, Enders M, Pankok F, Daniel R (2016) First insights into the genome sequence of the halophilic archaean Halalkalicoccus paucihalophilus (DSM 24557). Genome Announc 4(3):e00382-16 . (doi:10.1128/genomeA.00382-16)
63. Poehlein A, Schilling T, Bhaskar Sathya Narayanan U, Daniel R (2016) First insights into the draft genome of Clostridium colicanis DSM 13634, isolated from canine feces. Genome Announc 4(3):e00385-16. (doi:10.1128/genomeA.00385-16)
62. Poehlein A, Schlien K, Chowdhury NP, Gottschalk G, Buckel W, Daniel R (2016) Complete genome sequence of the amino acid-fermenting Clostridium propionicum X2 (DSM 1682). Genome Announc 4(2):e00294-16. (doi:10.1128/genomeA.00294-16)
61. Poehlein A, Seedorf H (2016) Draft genome sequences of Methanobrevibacter curvatus DSM11111, Methanobrevibacter cuticularis DSM11139, Methanobrevibacter filiformis DSM11501, and Methanobrevibacter oralis DSM7256. Genome Announc 4(3):e00617-16. (doi:10.1128/genomeA.00617-16)
60. Röttig A, Strittmatter CS, Schauer J, Hiessl S, Poehlein A, Daniel R, Steinbüchel A (2016) Genome analysis of the oleaginous Streptomyces strain G25 and characterization of its wax ester synthase/acyl coenzyme A:diacylglycerol acyltransferase (WS/DGAT). Appl Environ Microbiol 82(19):pii:AEM.01719-16. (doi:10.1128/AEM.01719-16)
59. Uhlig R, Poehlein A, Fischer RJ, Daniel R, Bahl H (2016) Genome sequence of the autotrophic acetogen Clostridium magnum DSM 2767. Genome Announc 4(3):e00464-16. (doi:10.1128/genomeA.00464-16)
58. Ullrich SR, González C, Poehlein A, Tischler JS, Daniel R, Schlömann M, Holmes DS and Mühling M (2016) Gene loss and horizontal gene transfer contributed to the genome evolution of the extreme acidophile “Ferrovum”. Front Microbiol 7:797. (doi:10.3389/fmicb.2016.00797)
57. Ullrich SR, Poehlein A, Tischler JS, González C, Ossandon FJ, Daniel R, Holmes DS, Schumann M, Mühling M (2016) Genome analysis of the biotechnologically relevant acidophilic iron oxidising strain JA12 indicates phylogenetic and metabolic diversity within the novel genus “Ferrovum”. PLOS One 11(1):e0146832. (doi:10.1371/journal.pone.0146832)
56. Beck MH, Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Dürre P (2015) Draft genome sequence of the strict anaerobe Clostridium homopropionicum LuHBu1 (DSM 5847). Genome Announc 3(5):e01112-15. (doi:10.1128/genomeA.01112-15)
55. Bengelsdorf FR, Poehlein A, Esser C, Schiel-Bengelsdorf B, Daniel R, Dürre P (2015) Complete genome sequence of the acetogenic bacterium Moorella thermoacetica DSM 2955T. Genome Announc 3(5):e01157-15. (doi:10.1128/genomeA.01157-15)
54. Bengelsdorf FR, Poehlein A, Schiel-Bengelsdorf B, Daniel R, Dürre P (2015) Genome sequence of the acetogenic bacterium Oxobacter pfennigii DSM 3222T. Genome Announc 3(6):e01408-15. (doi:10.1128/genomeA.01408-15)
53. Djukic M, Daniel R, Poehlein A (2015) First insights into the genome of Fructobacillus sp. EFB-N1, isolated from honey bee larva infected with European foulbrood. Genome Announc 3(4):e00868-15. (doi:10.1128/genomeA.00868-15)
52. Djukic M, Poehlein A, Strauß J, Tann FJ, Leimbach A, Hoppert M, Daniel R (2015) High quality draft genome of Lactobacillus kunkeei EFB6, isolated from a German European foulbrood outbreak of honeybees. Stand Genomic Sci 10(1):16. (doi:10.1186/1944-3277-10-16)
51. Eidam C, Poehlein A, Leimbach A, Michael GB, Kadlec K, Liesegang H, Daniel R, Sweeney MT, Murray R, Watt J, Schwarz S (2015) Analysis and comparative genomics of ICEMh1, a novel integrative and conjugative element (ICE) of Mannheimia hemolytica. J Antimicrob Chemother 70(1):93-97. (doi:10.1093/jac/dku361)
50. Eisen S, Poehlein A, Johnson DB, Daniel R, Schlömann M, Mühling M (2015) Genome sequence of the acidophilic ferrous iron-oxidizing isolate Acidithrix ferrooxidans strain Py-F3, the proposed type strain of the novel actinobacterial genus Acidithrix. Genome Announc 3(2):e00382-15. (doi:10.1128/genomeA.00382-15)
49. Eisen S, Poehlein A, Johnson DB, Daniel R, Schlömann M, Mühling M (2015) Genome sequence of the acidophilic iron oxidizer Ferrimicrobium acidiphilum strain T23T. Genome Announc 3(2):e00383-15. (doi:10.1128/genomeA.00383-15)
48. Kubiak AM, Poehlein A, Budd P, Kuehne SA, Winzer K, Theys J, Lambin P, Daniel R, Minton NP (2015) Complete genome sequence of the nonpathogenic soil-dwelling bacterium Clostridium sporogenes strain NCIMB 10696. Genome Announc 3(4):e00942-15. (doi:10.1128/genomeA.00942-15)
47. Lang K, Schuldes J, Klingl A, Poehlein A, Daniel R, Brune A (2015) Comparative genome analysis of "Candidatus Methanoplasma termitum" indicates a new mode of energy metabolism in the seventh order of methanogens. Appl Environ Microbiol 81(4):1338-1352. (doi:10.1128/AEM.03389-14)
46. Leimbach A, Poehlein A, Witten A, Scheutz F, Schukken Y, Daniel R, Dobrindt U (2015) Complete genome sequences of Escherichia coli strains 1303 and ECC-1470 isolated from bovine mastitis. Genome Announc 3(2):e00182-15. (doi:10.1128/genomeA.00182-15)
45. Petzsch P, Poehlein A, Johnson DB, Daniel R, Schlömann M, Mühling M (2015) Genome sequence of the acidophilic sulfate-reducing Peptococcaceae strain CEB3. Genome Announc 3(4):e00886-15. (doi:10.1128/genomeA.00886-15)
44. Petzsch P, Poehlein A, Johnson DB, Daniel R, Schlömann M, Mühling M (2015) Genome sequence of the moderately acidophilic sulfate-reducing firmicute Desulfosporosinus acididurans (strain M1T). Genome Announc 3(4):e00881-15. (doi:10.1128/genomeA.00881-15)
43. Poehlein A, Bandera A, Horne D, Maier J, Pawlowicz D, Siebert V, Daniel R (2015) First insights into the genome of the N-methylhydantoin-degrading Clostridium sp. strain FS41 (DSM 6877). Genome Announc 3(2):e00394-15. (doi:10.1128/genomeA.00394-15)
42. Poehlein A, Bengelsdorf FR, Esser C, Schiel-Bengelsdorf B, Daniel R, Dürre P (2015) Complete genome sequence of the type strain of the acetogenic bacterium Moorella thermoacetica DSM 521T. Genome Announc 3(5):e01159-15. (doi:10.1128/genomeA.01159-15)
41. Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Dürre P (2015) Draft genome sequence of purine-degrading Gottschalkia purinilyticum (formerly Clostridium purinilyticum WA1 (DSM 1384). Genome Announc 3(5):e01088-15. (doi:10.1128/genomeA.01088-15)
40. Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Gottschalk G, Daniel R, Dürre P (2015) Complete genome sequence of Rnf- and cytochrome-containing autotrophic acetogen Clostridium aceticum DSM 1496. Genome Announc 3(4):e00786-15. (doi:10.1128/genomeA.00786-15)
39. Poehlein A, Cebulla M, Ilg MM, Bengelsdorf FR, Schiel-Bengelsdorf B, Whited G, Andreesen JR, Gottschalk G, Daniel R, Dürre P (2015) The complete genome sequence of Clostridium aceticum: a missing link between Rnf- and Cytochrome-containing autotrophic acetogens. mBio 6(5):e01168-15. (doi:10.1128/mBio.01168-15)
38. Poehlein A, Daniel R, Simeonova D (2015) Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna. Stand Genomic Sci 10(1):100. (doi:10.1186/s40793-015-0086-x)
37. Poehlein A, Grosse-Honebrink A, Zhang Y, Minton NP, Daniel R (2015) Complete genome sequence of the nitrogen-fixing and solvent-producing Clostridium pasteurianum DSM 525. Genome Announc 3(1):e01591-14. (doi:10.1128/genomeA.01591-14)
36. Poehlein A, Montoya Solano JD, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Dürre P (2015) Draft genome sequence of purine-degrading Clostridium cylindrosporum HC-1 (DSM 605). Genome Announc 3(4):e00917-15. (doi:10.1128/genomeA.00917-15)
35. Poehlein A, Riegel K, König SM, Leimbach A, Daniel R, Dürre P (2015) Genome sequence of Clostridium sporogenes DSM 795T, an amino acid-degrading, nontoxic surrogate of neurotoxin-producing Clostridium botulinum. Stand Genomic Sci 10(2):40. (doi:10.1186/s40793-015-0016-y)
34. Rotta C, Poehlein A, Schwarz K, McClure P, Daniel R, Minton NP (2015) Closed genome sequence of Clostridium pasteurianum ATCC 6013. Genome Announc 3(1):e01596-14. (doi:10.1128/genomeA.01596-14)
33. Ullrich SR, Poehlein A, Daniel R, Tischler JS, Vogel S, Schlömann M, Mühling M (2015) Comparative genomics underlines the functional and taxonomic diversity of novel “Ferrovum” related iron oxidizing bacteria. Advanced Materials Research 1130:15-18. (doi:10.4028/www.scientific.net/AMR.1130.15)
32. Ullrich SR, Poehlein A, Voget S, Hoppert M, Daniel R, Leimbach A, Tischler JS, Schlömann M, Mühling M (2015) 10:56 (2015) Permanent draft genome sequence of Acidiphilium sp. JA12-A1. Stand Genomic Sci 10(2):56. (doi:10.1186/s40793-015-0040-y)
31. Valera MJ, Poehlein A, Torija MJ, Haack FS, Daniel R, Streit WR, Mateo E, Mas A (2015) Draft Genome sequence of Komagataeibacter europaeus CECT 8546, a cellulose-producing strain of vinegar elaborated by the traditional method. Genome Announc 3(5):e01231-15. (doi:10.1128/genomeA.01231-15)
30. Voget S, Knapp A, Poehlein A, Vollstedt C, Streit W, Daniel R, Jaeger KE (2015) Complete genome sequence of the lipase producing strain Burkholderia glumae PG1. J Biotechnol 204:3-4. (doi:10.1016/j.jbiotec.2015.03.022)
29. Wübbeler JH, Hiessl S, Meinert C, Poehlein A, Schuldes J, Daniel R, Steinbüchel A (2015) The genome of Variovorax paradoxus strain TBEA6 provides new understandings for the catabolism of 3,3'-thiodipropionic acid and hence the production of polythioesters. J Biotechnol 209:85-95. (doi:10.1016/j.jbiotec.2015.06.390)
28. Hess V, Poehlein A, Weghoff MC, Daniel R, Müller V (2014) A genome-guided analysis of energy conservation in the thermophilic, cytochrome-free acetogenic bacterium Thermoanaerobacter kivui. BMC Genomics 15:1139. (doi:10.1186/1471-2164-15-1139)
27. Ilmberger N, Güllert S, Dannenberg J, Rabausch U, Torres J, Wemheuer B, Alawi M, Poehlein A, Chow J, Turaev D, Rattei T, Schmeisser C, Salomon J, Olsen PB, Daniel R, Grundhoff A, Borchert MS, Streit WR (2014) A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes. PLOS One 9:e106707. (doi:10.1371/journal.pone.0106707)
26. Luo Q, Hiessl S, Poehlein A, Daniel R, Steinbüchel A (2014) Insights into the microbial degradation of rubber and gutta-percha by analysis of the complete genome of Nocardia nova SH22a. Appl Environ Microbiol 80(13):3895-3907. (doi:10.1128/AEM.00473-14)
25. Poehlein A, Alghaithi HS, Chandran L, Chibani CM, Davydova E, Dhamotharan K, Ge W, Gutierrez-Gutierrez DA, Jagirdar A, Khonsari B, Nair KPPR, Daniel R (2014) First insights into the genome of the amino acid-metabolizing bacterium Clostridium litorale DSM 5388. Genome Announc 2(4):e00754-14. (doi:10.1128/genomeA.00754-14)
24. Poehlein A, Andreesen JR, Daniel R (2014) Complete genome sequence of amino acid-utilizing Eubacterium acidaminophilum al-2 (DSM 3953). Genome Announc 2(3):e00573-14. (doi:10.1128/genomeA.00573-14)
23. Poehlein A, Freese HM, Daniel R, Simeonova DD (2014) Draft genome sequence of Serratia sp. strain DD3, ssolated from the guts of Daphnia magna. Genome Announc 2(5):e00903-14. (doi:10.1128/genomeA.00903-14)
22. Poehlein A, Krabben P, Dürre P, Daniel R (2014) Complete genome sequence of the solvent producer Clostridium saccharoperbutylacetonicum strain DSM 14923. Genome Announc 2(5):e01056-14. (doi:10.1128/genomeA.01056-14)
21. Eidam C, Poehlein A, Brenner Michael G, Kadlec K, Liesegang H, Brzuszkiewicz E, Daniel R, Sweeney MT, Murray RC, Watts JL, Schwarz S (2013) Complete genome sequence of Mannheimia haemolytica strain 42548 from a case of bovine respiratory disease. Genome Announc 1(3):e00318-13. (doi:10.1128/genomeA.00318-13)
20. Hornung C, Poehlein A, Haack FS, Schmidt M, Dierking K, Pohlen A, Schulenburg H, Blokesch M, Plener L, Jung K, Bonge A, Krohn-Molt I, Utpatel C, Timmermann G, Spieck E, Pommerening-Röser A, Bode E, Bode HB, Daniel R, Schmeisser C, Streit WR (2013) The Janthinobacterium sp. HH01 genome encodes a homologue of the V. cholerae CqsA and L. pneumophila LqsA autoinducer synthases. PLOS ONE 8(2):e55045. (doi:10.1371/journal.pone.0055045)
19. Krohn-Molt I, Wemheuer B, Alaw Mi, Poehlein A, Güllert S, Schmeisser C, Pommerening-Röser A, Grundhoff A, Daniel R, Hanelt D, Streit WR (2013) Metagenome survey of a multispecies and algae-associated biofilm reveals key elements of bacterial-algae interactions in photobioreactors. Appl Environ Microbiol 79(20):6196-6206. (doi:10.1128/AEM.01641-13)
18. Luo Q, Hiessl S, Poehlein A, Steinbüchel A (2013) Microbial gutta percha degradation shares common steps with rubber degradation by Nocardia nova SH22a. Appl Environ Microbiol 79(4):1140-1149. (doi:10.1128/AEM.03016-12)
17. Mosler S, Poehlein A, Voget S, Daniel R, Kipry J, Schlömann M, Mühling M (2013) Predicting the metabolic potential of the novel iron oxidising bacterium “Ferrovum” sp. JA12 using comparative genomics. Advanced Materials Research 825:153-156. (doi:10.4028/www.scientific.net/AMR.825.153)
16. Poehlein A, Daniel R, Schink B, Simeonova DD (2013) Life based on phosphite: a genome-guided analysis of Desulfotignum phosphitoxidans. BMC Genomics 14:753. (doi:10.1186/1471-2164-14-753)
15. Poehlein A, Daniel R, Simeonova DD (2013) Draft Genome Sequence of Desulfotignum phosphitoxidans DSM 13687 Strain FiPS-3. Genome Announc 1(3):e00227-13. (doi:10.1128/genomeA.00227-13)
14. Poehlein A, Deutzmann JS, Daniel R, Simeonova DD (2013) Draft genome sequence of the methanotrophic Gammaproteobacterium Methyloglobulus morosus DSM 22980 strain KoM1. Genome Announc 1:e01078-13. (doi:10.1128/genomeA.01078-13)
13. Poehlein A, Gottschalk G, Daniel R (2013) First insights into the genome of the Gram-negative, endospore-forming organism Sporomusa ovata strain H1 DSM 2662. Genome Announc 1(5):e00734-13. (doi:10.1128/genomeA.00734-13)
12. Poehlein A, Hartwich K, Krabben P, Ehrenreich A, Liebl W, Dürre P, Gottschalk G, Daniel R (2013) Complete genome sequence of the solvent producer Clostridium saccharobutylicum NCP262 (DSM 13864). Genome Announc 1(6):e00997-13. (doi:10.1128/genomeA.00997-13)
11. Poehlein A, Zverlov VV, Daniel R, Schwarz WH, Liebl W (2013) Complete genome sequence of Clostridium stercorarium subsp. stercorarium strain DSM 8532, a thermophilic degrader of plant cell wall fibers. Genome Announc 1(2):e00073-13. (doi:10.1128/genomeA.00073-13)
10. Schlömann M, Kipry J, Mosler S, Poehlein A, Keller A, Janneck E, Erler B, Tominski C, Jaffer Jwair R, Gelhaar N, Seifert J, Daniel R, Mühling M (2013) Physiological, genomic, and proteomic characterization of new “Ferrovum” strains obtained from a pilot plant for mine-water treatment. Advanced Materials Research 825:149-152. (doi:10.4028/www.scientific.net/AMR.825.149)
9. Sheppard AE, Poehlein A, Rosenstiel P, Liesegang H, Schulenburg H (2013) Complete genome sequence of Bacillus thuringiensis strain 407 Cry-. Genome Announc 1(1):e00158-12. (doi:10.1128/genomeA.00158-12)
8. Djukic M, Becker D, Poehlein A, Voget S, Daniel R (2012) Genome sequence of Paenibacillus alvei DSM 29, a secondary invader during european foulbrood outbreaks. J Bacteriol 194(22):6365. (doi:10.1128/JB.01698-12)
7. Hartwich K, Poehlein A, Daniel R (2012) The purine-utilizing bacterium Clostridium acidurici 9a: A genome-guided metabolic reconsideration. PLoS ONE 7(12):e51662. (doi:10.1371/journal.pone.0051662)
6. Mühling M, Mosler S, Poehlein A, Voget S, Daniel R, Kipry J, Schlömann M (2012) Genomanalyse eines neuartigen bergbaurelevanten Eisenoxidierers. Chemie Ingenieur Technik 84(8):1255-1257. (doi:10.1002/cite.201250135)
5. Oehler D, Poehlein A, Leimbach A, Müller N, Daniel R, Gottschalk G, Schink B (2012) Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum. BMC Genomics 13:723. (doi:10.1186/1471-2164-13-723)
4. Poehlein A, Schmidt S, Kaster A-C, Goenrich M, Vollmers J, Thürmer A, Bertsch J, Schuchmann K, Voigt B, Hecker M, Daniel R, Thauer RK, Gottschalk G, Müller V (2012) An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis. PLoS One 7(3):e33439. (doi:10.1371/journal.pone.0033439)
3. Spang A, Poehlein A, Offre P, Zumbrägel S, Haider S, Rychlik N, Nowka B, Schmeisser C, Lebedeva EV, Rattei T, Böhm C, Schmid M, Galushko A, Hatzenpichler R, Weinmaier T, Daniel R, Schleper C, Spieck E, Streit W, Wagner M (2012) The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: Insights into metabolic versatility and environmental adaptations. Environ Microbiol 14(12):3122-3145. (doi:10.1111/j.1462-2920.2012.02893.x)
2. Djukic M, Poehlein A, Thürmer A, Daniel R (2011) Genome sequence of Brevibacillus laterosporus LMG 15441, a pathogen of invertebrates. J Bacteriol 193(19):5535-5536. (doi:10.1128/JB.05696-11)
1. Poehlein A, Kusian B, Friedrich B, Daniel R, Bowien B (2011) Complete genome sequence of the type strain Cupriavidus necator N-1. J Bacteriol 193(18):5017. (doi:10.1128/JB.05660-11)